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CITATION:For all resources provided on the website ('Downloads' and 'Tools' pages), including the Personal Genome Constructor, personal genomes, transcriptomes and AlleleSeq tool, please cite:
Rozowsky J. et al. AlleleSeq: analysis of allele-specific expression and binding in a network framework. Mol Syst Biol. 2011.


For information on more personal genomes and additional resources for allele-specific behavior, please visit AlleleDB here.

Diploid genome of NA12878
Last updated: Jan 7 2017

Diploid genome of NA12878 (Dec 16 2012 version): variants and read depth (from CNVnator)
Last updated: Jun 27 2014

Diploid transcriptome (using GENCODE 3c) for NA12878
Last updated: Jun 15 2011

Gerstein Lab publications that are allele-related:

1) Rozowsky J et al. Mol Syst Biol (2011) Article

SNPs resulting in allele-specific behaviour (VCF format)

accessible hetSNPs in allele-specific expression (tab-delimited)

Genes with allele-specific expression

ChIP-Seq and RNAseq reads for GM12878

2) Djebali et al. Nature (2012) Article

SNPs resulting in allele-specific expression
(with implicated gene and transcript information)

3) Gerstein et al. Nature (2012) Article

ENCODE-nets datafiles (including allele-specific analyses)

4) Chen et al. Nat Commun (2016) Article

AlleleDB

5) Rozowsky et al. Cell (2023) Article

EN-TEx